The clinical manifestations of nonproductive cough, dyspnea, and non-specific discomfort are often misdiagnosed for atypical pneumonia. A 30-year-old female patient with cough and dyspnea was initially diagnosed with atypical pneumonia. Because of repeated admissions and fail to antibiotic therapy, she was diagnosed with cryptogenic organic pneumonia which was proven by computed to-mography and pathologic findings. After steroid therapy, spontaneous pneumothorax was developed. Patient’s condition was improved after the application of immunosuppressants. Therefore, if antibiotic treatment is not effective for such kind of patients, the possibility of cryptogenic organic pneumonia should be included in the differential diagnosis. In addition, once diagnosed, if steroid therapy is not effective, immunosuppressants should be added to the treatment without delay.