Alcohol intolerance is generally considered genetically linked to a congenital deficiency of aldehyde dehydrogenase 2 (ALDH2), an enzyme essential for alcohol metabolism. This deficiency impairs the breakdown of acetaldehyde, a toxic byproduct of alcohol metabolism, leading to its accumulation in the body. Acute symptoms of alcohol intolerance, typically appearing within minutes of alcohol consumption, include dizziness, headache, nausea, vomiting, tachycardia, muscle weakness, and facial flushing. Chronic exposure to elevated acetaldehyde levels increases the risk of liver damage, cardiovascular diseases, and cancers, including those of the oral cavity, oropharynx, esophagus, and colon. Alcohol intolerance is caused by a specific missense mutation in the ALDH2 gene, known as E504K (single nucleotide polymorphism rs671, G>A), or the ALDH2*2 allele. This mutation is particularly prevalent in East Asia, affecting approximately 540 million individuals, or about 8% of the global population. The prevalence in East Asia is significantly higher, ranging from 20% to 30%, with Taiwan reporting the highest rate, where nearly 49% of the population is affected. This review examines the mechanisms of alcohol metabolism, the epidemiology and health risks of alcohol intolerance, and future directions in genetic research on this condition.