Urinary tract infection (UTI) is the most common bacterial infection in humans, and its diagnosis by urine culture is expensive and time-consuming. The study was aimed to evaluate the diagnostic utility of Sysmex UF-1000i. We analyzed 9,951 cases with the results of urinalysis and concurrent bacterial culture from October, 2015 to July, 2016. In total, 1,356 (13.6%) urine specimens showed positive bacterial cultures using the gold standard with a cut-off value of 1x105 CFU/mL. Based on the analysis of 9,951 urine samples by receiver operating characteristic curve with an area under curve of 0.929, the best cut-off value is 283.6 bacteria /μL. The sensitivity, specificity, accuracy and negative predictive value (NPV) were 0.85, 0.88, 0.87 and 0.97, respectively, while the positive predictive value (PPV) was 0.53. Bacterial morphology flags are given by the urine flow cytometer Sysmex UF-1000i when the quantitative results of bacteria and WBC exceed the thresholds of 100/mL and 10/mL, respectively. Evaluation of the bacterial morphology flags with 9,951 cases demonstrated the sensitivity and NPV were 0.87 and 0.97, respectively, while the specificity, accuracy and PPV were 0.83, 0.83, and 0.45, respectively. As the cut-off value increasing, the PPV increases while the NPV decreases. Taken together, the 283.6 bacteria /μL analyzed by Sysmex Uf-1000i could be a better tool than its bacterial morphology flag to rule out UTI.