Background and purpose: The aim of the study is to explore the roles of urothelial dysfunction and chronic inflammation in the pathophysiology of recurrent bacterial cystitis. Methods: A total of 30 women with recurrent bacteria cystitis at least twice in one year consecutivelywere enrolled in this study. 10 women with stress urinary incontinence without irritative bladder symptoms or any episode of UTI served as the control group. Urothelial dysfunction markers (TUNEL for apoptosis, Ki-67 for proliferation, tryptase staining for mast cell activity, E-cadherin and ZonulaOccludens-1 for junction protein expression) were assessed to explore the possibility of urothelial dysfunction in the bladder mucosa. Results: Compared to those in the controlled group, the bladder mucosa in the experimental group had reduced expression of immuno-fluorescent markers in detecting E-cadherin, but increased expression of mast cell and urothelial dysfunction (TUNEL). The expression of immune-histochemical (IHC) stain with E-cadherin, mast cell and TUNEL of recurrent group had significantdifference when compared to the controlled group, respectively. (p< 0.05) Western blot analysis for phospho-p38 and trypatse to confirm the inflammatory events and Bax protein expression to confirm the apoptotic process, which showed that the expressions of phospo-p38 (about 3.6 folds), tryptase (about 2.0 folds) and Bax (about 2 folds) increased in the recurrent UTI specimens compared with the normal control specimens. Conclusion: Increased expression related to chronic inflammation and apoptosis in bladder mucosa of the patients with recurrent urinary tract infection was observed when compared to those in normal control group. This evidence demonstrates that chronic inflammation and urothelial dysfunction are present in most women with recurrent UTI.